rs49313575 SNP Detail

Summary

• ID
  rs49313575
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:3443130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGCCGAGG CTCTGCCCCC
  TTCCGGGCCC CGCCCCTCTG GGGACGGCCT ACTCATGCGC AGCTTGGTCT CGCACTGCAT
  ACCGCTTCCG GCTCCTAGGA GGCCGGGCGG AGACTGCGAG AGCGACCCGG GAGCCAGCAG
  GGCGGAGAGC GGCCTGTGAG GGACCCCGCG GAGGTGAGGG AGCCACGGCG ATTTTCGTGG
  Y
  GCAGGGGCCG GGGTCGCGGA CTCTTTGGAA ACTACCTGGT ATACAACACC CCCTCCCCCA
  TGGTGCCGCA GGGCTGAGCA CGCCTCCGAT ACAGGTGACC TCTTCCATAC AAGTGGGGCT
  CCAAGTGGAG AATGTGGGGG TGCAGTGATG CAGACCATAC CCAGTCACCC TGTCCCTGCG
  CCGTGGACGC TGTAGCCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61077160	NES16044710	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs49313575					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61077160	NES16044710	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3443130 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Arhgef18	Rho/Rac guanine nucleotide exchange factor 18			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr381632	regulatory region 381632			within coordinates
Rr658901	regulatory region 658901			82 bp distal
Rr658902	regulatory region 658902			170 bp distal
Rr658903	regulatory region 658903			within coordinates
Rr658904	regulatory region 658904			1492 bp proximal
Tssr76040	transcription start site region 76040			115 bp downstream
Tssr76041	transcription start site region 76041			77 bp downstream