rs49280341 SNP Detail

Summary

• ID
  rs49280341
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:85353478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAAACAGT AGGCAACAAG
  GTGTCTTCAT TGCCACTAAA CCTGACAACT TGAGTTCGAT CCTCCTCAGG ACTCACGTGA
  TAGGAGAGAG CTAATTCCAG CAAGTTGTTC TCAGACCTCC ACAAGTACAC CGTAGCACAC
  TCTCTCACAC CAAATATAAT AATAAAACTT TAAAAACATC GGAAGGGGAG AAGAAAGAGA
  W
  TTCAAAAGTC CTCCCTTCCT AGATCCTGGG GTATATCTTT TACTTTATTC TGTCTGTCTT
  TCTGTCTGTC TGTCTCTGCG GGGGGCAGAA GGTGTCAGAG AACAATCCTT GGGCCTCAGT
  TCTCACTGGA TCACCTGAGG TCATTAGGCT CTGTGGCAGC TACCTGCTCT ACCTACTGAG
  CTTTCCTATC TGATTATACT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60906848	NES15957606	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49280341					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60906848	NES15957606	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85353478 () rs orientation: forward

Symbol	Name	Function Class
4933423K11Rik	RIKEN cDNA 4933423K11 gene	within coordinates
Cpgi17642	CpG island 17642	1290 bp distal
Rab11fip5	RAB11 family interacting protein 5 (class I)	1862 bp upstream
Rr633193	regulatory region 633193	1667 bp distal
Rr633194	regulatory region 633194	904 bp distal
Rr633195	regulatory region 633195	978 bp distal
Rr633196	regulatory region 633196	523 bp proximal
Tssr61747	transcription start site region 61747	1943 bp upstream
Tssr61748	transcription start site region 61748	1917 bp upstream
Tssr61749	transcription start site region 61749	1904 bp upstream
Tssr61750	transcription start site region 61750	1832 bp upstream
Tssr61751	transcription start site region 61751	1792 bp upstream