rs49274366 SNP Detail

Summary

• ID
  rs49274366
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:123178476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGAGCATTT CCCTCCATTA CTTATATTGA TTTGTATGGT
  GTAATGAAAA CAGCCTGAGA TTTTTAAGTA AAACAACTTG TAGTATGTAT TCCCTGCATG
  W
  ATGGTCTACT AAACGGCAAG CACTCACATC TTCATTCACT AGCTTCAATG AAAGCGAAAG
  GTTTGAAAAG TAATCTCTAG AGAGAGGAAT CTTAGAGAA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss135764299	ENSMUSSNP5790494	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320919469	CHEV_3_123087745	CHEVERUD	SCREENING_POP	f	SNP		A	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49274366					SNP	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123178476 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13777	CpG island 13777	899 bp proximal
Mettl14	methyltransferase 14, N6-adenosine-methyltransferase subunit	Intron
Rr397990	regulatory region 397990	925 bp upstream
Rr584510	regulatory region 584510	357 bp proximal
Rr584511	regulatory region 584511	1094 bp proximal
Tssr35499	transcription start site region 35499	841 bp downstream
Tssr35500	transcription start site region 35500	1098 bp downstream
Tssr35501	transcription start site region 35501	1167 bp downstream