rs49274113 SNP Detail

Summary

• ID
  rs49274113
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:71158650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTTGGGG CCTTTCCTCC
  CCGGGCTAGC GAAGAGTGCA TTTAGTTTGT AAAGGATGGA GAGAGGTTTA AGGACATCTC
  CTCTGTCCAC CCCAGAGAAG AAAAGACACC CCCATCCTTG TTTTTGACAG CTGCCCCAAA
  CTTCACTGTC TCTGCTCCAG CCGCCGGAGG CAGCAGCTTC TGATTCAAGG GGTGGGGCAC
  Y
  GAAGGAAAAG TATTCCAGAC AAGAATCAAC TTCTTCCAGA AGGCGCAGCT GCCATTGACA
  CGCGGGCGCG GCACAGCGCA CCCTCCTCCT CGTGGACTCT TCTGCCAACA GCGACAGTGG
  GGGTGGGGGG AGGCAGACAT AGTCACCGTG GGCAAATGTC TATTCCCCCG GGCTAAAGCT
  CTGAGTTCCG GATTGGATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60272780	NES15767700	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49274113					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60272780	NES15767700	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:71158650 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm36856	predicted gene, 36856			1917 bp upstream
Gm56903	predicted gene, 56903			452 bp downstream
Gm56904	predicted gene, 56904			within coordinates
Rr405418	regulatory region 405418			597 bp upstream
Rr530335	regulatory region 530335			978 bp distal
Rr530336	regulatory region 530336			597 bp distal
Rr530337	regulatory region 530337			543 bp distal
Rr530338	regulatory region 530338			within coordinates
Rr530339	regulatory region 530339			69 bp proximal
Rr530340	regulatory region 530340			612 bp proximal
Rr530341	regulatory region 530341			1113 bp proximal
Rr530342	regulatory region 530342			1492 bp proximal
Tgif1	TGFB-induced factor homeobox 1			Intron
				mRNA-UTR
Tssr145685	transcription start site region 145685			1468 bp downstream
Tssr145686	transcription start site region 145686			935 bp downstream
Tssr145687	transcription start site region 145687			291 bp downstream
Tssr145688	transcription start site region 145688			360 bp upstream
Tssr145689	transcription start site region 145689			750 bp upstream
Tssr145690	transcription start site region 145690			1076 bp upstream
Tssr145691	transcription start site region 145691			1096 bp upstream
Tssr145692	transcription start site region 145692			1140 bp upstream
Tssr145693	transcription start site region 145693			1345 bp upstream
Tssr145694	transcription start site region 145694			1445 bp upstream
Tssr149220	transcription start site region 149220			1830 bp upstream
Tssr149221	transcription start site region 149221			1297 bp upstream
Tssr149222	transcription start site region 149222			587 bp upstream
Tssr149223	transcription start site region 149223			568 bp upstream
Tssr149224	transcription start site region 149224			537 bp upstream
Tssr149225	transcription start site region 149225			439 bp upstream
Tssr149226	transcription start site region 149226			423 bp upstream
Tssr149227	transcription start site region 149227			12 bp upstream
Tssr149228	transcription start site region 149228			55 bp downstream
Tssr149229	transcription start site region 149229			101 bp downstream
Tssr149230	transcription start site region 149230			231 bp downstream
Tssr149231	transcription start site region 149231			577 bp downstream
Tssr149232	transcription start site region 149232			620 bp downstream
Tssr149233	transcription start site region 149233			1140 bp downstream
Tssr149234	transcription start site region 149234			1520 bp downstream
Tssr149235	transcription start site region 149235			1817 bp downstream
Tssr149236	transcription start site region 149236			1827 bp downstream
Tssr149237	transcription start site region 149237			1896 bp downstream
Tssr149238	transcription start site region 149238			1987 bp downstream