rs49267561 SNP Detail

Summary

• ID
  rs49267561
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:167119139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTTGGAAC TAGAGAGCTG
  GCTCAGCAGA GGACCAGAAT TCAGCTCCTG TTACCCAGTT ATCCAGTCAC AGCTCCAGAT
  CAGATTCACA ACTCCAGATC AGGGAATCTG GTACCTTGTC CTGGTCTCCT GGGACATTGC
  ACCCACATGC ACAAAACCTA ATACTCAGAT ACACACAAAG TTAAATGTTT TTGAAAGATA
  Y
  ATTTTTTAAA AAAAATAATG GTCAGAATAG GAGCATCTAT AAAGTCAGAA ATAAGCTACA
  TAGGAGGCTT GGGGAGATGG GTTAGAGACT AGGAGTGGGT CTAGGACTCG TTATGTTGTG
  GTCTCACAGC CTTGAACATA CTGAAAATCA CCGAGGGGCT AGGGAGGTGT TCCAGTCTGG
  TTCTGCCACA GGAACCTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146036416	ENSMUSSNP2612179	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49267561					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:167119139 () rs orientation: forward

Symbol	Name	Function Class
Gm57182	predicted gene, 57182	within coordinates
Mir6347	microRNA 6347	1345 bp downstream
Rr422672	regulatory region 422672	1108 bp distal
Rr422673	regulatory region 422673	656 bp proximal