rs49251558 SNP Detail

Summary

• ID
  rs49251558
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41114941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTTCTCT AAACAAAAGT
  GGATTTATTT TATCTCACAG CATGAAGATT TTAGAGTCAT AGAAACAGAT TTTTTCTGGC
  ACAGGGGATG TTTACCCACA AGAAATGGGC TCCTCAGAAA GGAATCCAGA CTTCTGAAGG
  TCACTTTTGA TTGGATTAAA TCAACAAGGC CTGACCAGGC TAATGGTTTC TGATGGTTCC
  Y
  AGAACCCTGA GGCAGGAGGC TTGTTAGTGA TGGTGGTAGC TAGGGAAGTG TTTAGATATA
  CAGAAGAGTT GTAAACCGAG TGAATAGCGT TTCTGTGTGC CCTTCATTCA GCTTTCCCCA
  CAGACATTGT GCTTTGCCTT GCCTCAAGCA GGGTCCTGAC TAGTATTCTC CCAGTACTAC
  CAATGACCCC ACACATCTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60399314	NES15900102	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49251558					SNP	T	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60399314	NES15900102	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41114941 () rs orientation: forward

Symbol	Name	Function Class
Gm40038	predicted gene, 40038	within coordinates
Gm64942	predicted gene, 64942	within coordinates
Rr575902	regulatory region 575902	1380 bp distal
Rr575903	regulatory region 575903	328 bp proximal