rs49246662 SNP Detail

Summary

• ID
  rs49246662
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113893801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTAGGGGGAA GAATTACTGA GTAAGATTCA TCATGTTATG
  CTGTGTTTAT GAAGTCATTT TCTACCACAT TCATTTTTTA TTTAAAGAAC ACTCATTTCT
  R
  TAATCAAAGA TAGGACCTTA CATATTCAGT ACAGTGCATT TACTCTTGTA CAAATGGAAA
  AAAAGTAAGT TTAACATTTC AAGACCAAGA TAGCTATTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147246093	ENSMUSSNP446975	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320462371	CHEV_2_113889056	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49246662					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113893801 () rs orientation: forward

Symbol	Name	Function Class
Actc1dt	actin, alpha, cardiac muscle 1 divergent transcript	1815 bp downstream
Rr562822	regulatory region 562822	789 bp proximal