rs49234121 SNP Detail

Summary

• ID
  rs49234121
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53372312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAGGCTAAA AGTATCTCTT ACATAAAAAA TAGCAGGTTG
  CCTGTTTGAC AGAAAGGGCA GTGCTGTGAC CTCACAGCAT CTCACAGCTT GCATCTGTTC
  R
  GCATCTCAAA CGGTGCCCCT GACTGGCACT GCAAAAATTG GCGCCAGATC TAGAGGTTTT
  TGTTTTTGTT TTTTTGTTTG TTTGTTTGTT TTTTGAGACA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	WSB/EiJ
ss60413046	NES15907417	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	WSB/EiJ
rs49234121					SNP	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60413046	NES15907417	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53372312 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13163	CpG island 13163	844 bp distal
Nhlrc3	NHL repeat containing 3	1633 bp upstream
Proser1	proline and serine rich 1	Intron
Rr374971	regulatory region 374971	371 bp downstream
Rr576697	regulatory region 576697	1215 bp distal
Rr576698	regulatory region 576698	1279 bp distal
Rr576699	regulatory region 576699	206 bp distal
Rr576700	regulatory region 576700	1568 bp proximal
Tssr29113	transcription start site region 29113	1301 bp downstream
Tssr29114	transcription start site region 29114	1210 bp downstream
Tssr29115	transcription start site region 29115	1182 bp downstream
Tssr29116	transcription start site region 29116	1069 bp downstream
Tssr29117	transcription start site region 29117	985 bp downstream
Tssr33269	transcription start site region 33269	1659 bp upstream
Tssr33270	transcription start site region 33270	1585 bp upstream