rs49230573 SNP Detail

Summary

• ID
  rs49230573
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:80021658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTC CTTTTAAGAT TAATATTTGG
  M
  TGGATGTAGG AGCCCGTGCT TAGTC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322281244	CHEV_7_87516796	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs49230573					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:80021658 () rs orientation: forward

Symbol	Name	Function Class
Gm71928	predicted gene, 71928	within coordinates
Man2a2	mannosidase 2, alpha 2	535 bp upstream
Rr649878	regulatory region 649878	436 bp distal
Rr649879	regulatory region 649879	513 bp distal
Rr649880	regulatory region 649880	460 bp distal
Rr649881	regulatory region 649881	6 bp distal
Rr649882	regulatory region 649882	1629 bp proximal
Tssr67437	transcription start site region 67437	1551 bp downstream
Tssr67438	transcription start site region 67438	541 bp upstream
Tssr73222	transcription start site region 73222	1120 bp upstream
Tssr73223	transcription start site region 73223	1082 bp upstream
Tssr73224	transcription start site region 73224	1041 bp upstream
Tssr73225	transcription start site region 73225	542 bp upstream
Tssr73226	transcription start site region 73226	494 bp upstream
Tssr73227	transcription start site region 73227	416 bp upstream