rs49209705 SNP Detail

Summary

• ID
  rs49209705
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148217136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCAGTTGA TTGGCCAAAG
  CAGATCCAAA TGTCCATCAG CAGATGAGAG TACAAACACA CTGTGGTCCT TCAGGAGAAG
  GGGATGTTAA CTGGTCCTAA AAAGGAATTC AAGAACAGCA GAGAGGCCCA ACATGTAAAA
  ATGCGTGATG CTAAGCCTGA CCACCTGCAT TCGAATCCCA AGGCCCACAT GTAAGGAAAG
  W
  AGTGACTCCC CCAAATTGCC CTTTGACCTT TATACACGTG CAATGATGCA TGCCTCCCAA
  TAAATATAAT TTAGTAATTT TTTAAAATTT AATTTATTTT TTACACTCCA TATTCCATCT
  TACCCTCCAT CCACCCTCTG ACTGCTCCAC ATCCCACACA TTGTGTCCCC CCTCTGTCTT
  CACGTGGATC CTCCCACCCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147994049	ENSMUSSNP1076155	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49209705					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148217136 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15291	CpG island 15291			887 bp distal
Draxin	dorsal inhibitory axon guidance protein			1981 bp upstream
Mad2l2	MAD2 mitotic arrest deficient-like 2			Intron
				Noncoding-Transcript-Variant
Rr604596	regulatory region 604596			1992 bp distal
Rr604598	regulatory region 604598			1754 bp distal
Rr604599	regulatory region 604599			179 bp distal
Tssr1378	transcription start site region 1378			1816 bp downstream
Tssr40251	transcription start site region 40251			1907 bp downstream
Tssr40252	transcription start site region 40252			1849 bp downstream
Tssr40253	transcription start site region 40253			1784 bp downstream
Tssr44587	transcription start site region 44587			1973 bp upstream