rs49207857 SNP Detail

Summary

• ID
  rs49207857
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105723272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACT TGGAGGAGGA CAAGTGAATG
  Y
  ATCTCATAAA GGAGAAGGTA ATATA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135577888	ENSMUSSNP5329835	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss320863291	CHEV_3_105618874	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49207857					SNP	C	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105723272 () rs orientation: forward

Symbol	Name	Function Class
Gm5547	predicted gene 5547	within coordinates
Rr582787	regulatory region 582787	367 bp distal
Rr582788	regulatory region 582788	86 bp distal
Rr582789	regulatory region 582789	177 bp proximal
Tssr31084	transcription start site region 31084	401 bp downstream