rs49166269 SNP Detail

Summary

• ID
  rs49166269
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:16718375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGAGTCA TCTGAATTGG
  GGTGATTGTG GGAAGGTACA TTTTGGGACT GAGTGACTGT GGATAGGAGG TGATAGACCA
  GGGAATGGGT GGCTTTTGAG CCAGAAAGAT TAGCACCTGA ATGTGGCACA TTGTTTTGGC
  CTTGTCAGGA AAGCCTATTT ATTCTGCTCA ATCTTGGGGA CTGAGCTAGG AAGCCTTTAG
  Y
  ATGCCACACA AGCGCTCTAT CACTGAACCA CGCACCCAGA CCCGCACTGG GAGATTCTAG
  GCAAACTGTG TTAGTGAACT ATATCTGCAG TCTGAGCCTA GTACTTCCTA ACTTGGGGGC
  TAGAGCTGAG TGGGTGTGGC CTACAGAGTG TTTTTTTGTT CACTCTGTAT ATGTCTATTT
  CACACCCACA ATATTCCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148401969	ENSMUSSNP381181	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49166269					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16718375 () rs orientation: forward

Symbol	Name	Function Class
Pnma8c	PNMA family member 8C	mRNA-UTR
Rr642835	regulatory region 642835	1354 bp distal
Tssr64666	transcription start site region 64666	1300 bp downstream
Tssr64667	transcription start site region 64667	1267 bp downstream