rs49124906 SNP Detail

Summary

• ID
  rs49124906
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142325036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGCTGCTA TGACATGATT
  TGCATATCTC TGAAGATAAA TGCCTTTTAC AATGTGGCAG AAGCACTGTT TAAGTGAAAA
  CTGTTAATAA AAATGATTAA GCTTACCATA ATTGTTTCAA GTGCATGCTG TACATTGTTC
  ATAATGTAAG AAACGCCGCT CCTAAATTTC TGTAAGAGGG GAGGTCATTA GAAGACTCTT
  A
  GCTGTCACAC AGGCACCCAA TGATGAGGGG TTCAGCTCTG CAACTGAACA TTCAGAATAA
  CAGTAGTACC ACACAGAGGA AATGTCACAG TCACGGGGCT TAGTACTCTT GTGGAATACA
  GAAACACAAA GATACTTTCT GTATAATTAT TTTCTGGTAG TGGCATTAAA CCCAGGGCTT
  TAAAAAATAC TTCTAGTGGT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss136016089	ENSMUSSNP783000	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs49124906					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142325036 () rs orientation: forward

Symbol	Name	Function Class
Gbp2	guanylate binding protein 2	1388 bp upstream
Gbp2b	guanylate binding protein 2b	96 bp downstream
Gm54185	predicted gene, 54185	within coordinates
Rr398088	regulatory region 398088	607 bp upstream
Rr586457	regulatory region 586457	299 bp distal
Rr586458	regulatory region 586458	837 bp proximal
Rr586459	regulatory region 586459	1338 bp proximal
Tssr32216	transcription start site region 32216	1090 bp downstream
Tssr32217	transcription start site region 32217	1052 bp downstream
Tssr32218	transcription start site region 32218	998 bp downstream
Tssr32219	transcription start site region 32219	961 bp downstream
Tssr32220	transcription start site region 32220	947 bp downstream
Tssr32221	transcription start site region 32221	929 bp downstream
Tssr32222	transcription start site region 32222	873 bp downstream
Tssr32223	transcription start site region 32223	816 bp downstream
Tssr32224	transcription start site region 32224	762 bp downstream
Tssr32225	transcription start site region 32225	424 bp downstream
Tssr32226	transcription start site region 32226	384 bp downstream
Tssr32227	transcription start site region 32227	1321 bp upstream
Tssr32228	transcription start site region 32228	1372 bp upstream
Tssr32229	transcription start site region 32229	1411 bp upstream
Tssr32230	transcription start site region 32230	1447 bp upstream
Tssr32231	transcription start site region 32231	1464 bp upstream
Tssr32232	transcription start site region 32232	1998 bp upstream
Tssr35947	transcription start site region 35947	94 bp upstream