rs49101353 SNP Detail

Summary

• ID
  rs49101353
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:16717383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATTGCCAA AGGCCACCGG
  CAGCGCAGGG GAAGTCTGCA TCTTCAAACT CTCCTTGGAG CAACCTTGCC TAAGACCTGG
  GAGCCACGAC TACTCAGCTC CAATTCCGTG GCTGACGTGA GTCACTCGCA GGGGGCAGGC
  TGCAGACGGC TGGGCTGGGC AGGGGTCCTC TTGACTGAGT TGGACCAATT GGGACTATCG
  R
  TAGCCTCACC TGTGAGGCCT TGTTTTCTCA TCACTCTTGA AAAGAGACTT CAGCATCCTG
  GATCCTTCTG TGGTTTCTCG AGGCAGCTCC ACAGCGCAGC AGCGCGCGTA CAGCTGCCTC
  AAGGAGTTGG GCAAAATGGT ATTTGGAGTG CAGGACATTG CATTGTTAGA ACATGGTTGC
  AAGGCCTTGG AGGTAGACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148401933	ENSMUSSNP5899260	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49101353					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16717383 () rs orientation: forward

Symbol	Name	Function Class
Pnma8c	PNMA family member 8C	mRNA-UTR
Rr642835	regulatory region 642835	362 bp distal
Tssr64666	transcription start site region 64666	308 bp downstream
Tssr64667	transcription start site region 64667	275 bp downstream