rs49079019 SNP Detail

Summary

• ID
  rs49079019
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:99277981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATCA AAAAAAAAAA AAAAAATAGG
  R
  AAAAGATGAG ACCATTTGGG CATGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss132708744	ENSMUSSNP6705949	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49079019					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99277981 () rs orientation: forward

Symbol	Name	Function Class
Gm11940	predicted gene 11940	185 bp upstream
Krt10	keratin 10	Intron
Rr402952	regulatory region 402952	1149 bp downstream
Rr402953	regulatory region 402953	838 bp downstream
Rr456497	regulatory region 456497	568 bp distal
Tssr3665	transcription start site region 3665	1920 bp upstream
Tssr104868	transcription start site region 104868	1554 bp downstream
Tssr104869	transcription start site region 104869	177 bp upstream
Tssr104870	transcription start site region 104870	1585 bp upstream
Tssr104871	transcription start site region 104871	1631 bp upstream
Tssr104872	transcription start site region 104872	1817 bp upstream
Tssr104873	transcription start site region 104873	1830 bp upstream
Tssr104874	transcription start site region 104874	1892 bp upstream
Tssr104875	transcription start site region 104875	1930 bp upstream
Tssr110653	transcription start site region 110653	1852 bp upstream
Tssr110654	transcription start site region 110654	1816 bp upstream
Tssr110655	transcription start site region 110655	1069 bp upstream
Tssr110656	transcription start site region 110656	1056 bp upstream
Tssr110657	transcription start site region 110657	995 bp upstream
Tssr110658	transcription start site region 110658	456 bp upstream
Tssr110659	transcription start site region 110659	20 bp upstream
Tssr110660	transcription start site region 110660	160 bp downstream
Tssr110661	transcription start site region 110661	479 bp downstream
Tssr110662	transcription start site region 110662	912 bp downstream