rs49068248 SNP Detail

Summary

• ID
  rs49068248
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52165024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTTTCTA GAGAGACCCT
  GACTCCAAAA AATAAAAGTA AATATAATTT TAATGTTATT ATTGCAGGGG TGGGGTGTGA
  GAAGAGGTCA GAGGCCAACT CTCTCCACTG AGTTCTGAGA ACTGAACTTG GGTCTTCTTG
  GTTTAGGAAC ACAACTTCCA ATGGGCAACT CTTTCCAGTC CTGCACATGA AGTTGGGATG
  S
  CAAGAGTGAG AGACCCTGGA ATCTGGTTCT AGCTTATGAT AGATACAGGT TTGCTTGAAT
  AAATGGCCAG CCAAGTTATG TAAATGATTA ACCGTGTGAT GGACAAGTTT GATTCACAGT
  GATGTTTATT TGATTGATTG ATTGATTGAT TGATTGACTG GTGTTTCTGT TTTGTCTTGT
  CCCCCTCAAA AGGACTGATG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60410292	NES15916425	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49068248					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60410292	NES15916425	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52165024 () rs orientation: forward

Symbol	Name	Function Class
Gm30125	predicted gene, 30125	1107 bp downstream
Gm38132	predicted gene, 38132	1094 bp downstream
Gm66188	predicted gene, 66188	1191 bp upstream
Rr576482	regulatory region 576482	within coordinates
Rr576483	regulatory region 576483	229 bp proximal
Rr576484	regulatory region 576484	1024 bp proximal