rs49061885 SNP Detail

Summary

• ID
  rs49061885
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138783965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAAC TCTTGTTCCG GGTGATCTAC
  W
  GCCCTCTTCT GGCCTCCATG GGCAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135960425	ENSMUSSNP1229559	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320982567	CHEV_3_138741168	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49061885					SNP	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138783965 () rs orientation: forward

Symbol	Name	Function Class
Gm56773	predicted gene, 56773	1663 bp downstream
Rr586244	regulatory region 586244	1617 bp distal
Rr586245	regulatory region 586245	within coordinates
Rr586246	regulatory region 586246	1719 bp proximal