rs49060178 SNP Detail

Summary

• ID
  rs49060178
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147614538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATAG CTTTAATTTC AGGAGACTAA
  K
  ACAAGCAGAA CTCTGGATCA AGACC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147967904	ENSMUSSNP2926170	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
ss321414796	CHEV_4_146904190	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs49060178					SNP	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147614538 () rs orientation: forward

Symbol	Name	Function Class
Gm13141	predicted gene 13141	1907 bp upstream
Gm69897	predicted gene, 69897	within coordinates
Rr398834	regulatory region 398834	1175 bp downstream
Rr604496	regulatory region 604496	458 bp proximal