rs49019563 SNP Detail

Summary

• ID
  rs49019563
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51294061 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTT GAAGACTTGA CACTGAATCG
  M
  ATCAGAGACA AATACAAAGT ATCAT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135173158	ENSMUSSNP6104748	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C
ss320762586	CHEV_3_51190562	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49019563					SNP	A	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51294061 () rs orientation: forward

Symbol	Name	Function Class
Gm5103	predicted gene 5103	316 bp downstream
Mgarp	mitochondria localized glutamic acid rich protein	1772 bp downstream
Rr576306	regulatory region 576306	237 bp proximal
Rr576307	regulatory region 576307	1316 bp proximal