rs48990781 SNP Detail

Summary

• ID
  rs48990781
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:145653560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTAGAAATA ACTTGAATTT GGTGGAACAC AATCATTTAT
  TGTTCTTCCT CATTGTAACC TAGAACCTTA TAACATTTTA TTTTTCTTTA TGATGGGTCT
  Y
  ACCACATACA CAGCCCAGGC TGGCCGGGAA CTCATTATGT GGCCCATTCT AGTCTCAAAG
  TCAAAGATCT TCCTGCCTCT GCCTTCAGAG TGCTGGGAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147846583	ENSMUSSNP2004681	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48990781					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:145653560 () rs orientation: forward

Symbol	Name	Function Class
Rin2	Ras and Rab interactor 2	Intron
Rr566581	regulatory region 566581	702 bp distal
Rr566582	regulatory region 566582	777 bp distal