rs48958790 SNP Detail

Summary

• ID
  rs48958790
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:101040877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTATGATGAC TACAGCATCA TTAAGGAATA TAACCTACGG
  CACTATGGTT ACCATATGGT CAACCACCAT TGTACAAAAG AATTACTGAA TAAACCCTTA
  T
  CTATTGAAGA TCCTCCACGT TTTCAGGAAG AGGGATTGAA TTATGCTGTA GAAACTCTTT
  TTAGACTTAT TTATTTTATG TGTATGAGTG TTTTGCCTA                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133429391	ENSMUSSNP973158	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss321872868	CHEV_6_101013910	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48958790					SNP	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:101040877 () rs orientation: forward

Symbol	Name	Function Class
Gm43948	predicted gene, 43948	within coordinates
Gm43950	predicted gene, 43950	within coordinates
Rr635751	regulatory region 635751	138 bp proximal