rs48920880 SNP Detail

Summary

• ID
  rs48920880
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117741705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGCA GCAAGAGGTG AGTGCAGGGG
  R
  GACCCTGAAC ACCAAGCCCC AGAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147295064	ENSMUSSNP4315002	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss321280673	CHEV_4_117557113	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48920880					SNP	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117741705 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp6v0b	ATPase, H+ transporting, lysosomal V0 subunit B			mRNA-UTR
				Noncoding-Transcript-Variant
B4galt2	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2			981 bp upstream
Cpgi14670	CpG island 14670			664 bp distal
Gm12841	predicted gene 12841			within coordinates
Rr598245	regulatory region 598245			1407 bp distal
Rr598246	regulatory region 598246			1484 bp distal
Rr598247	regulatory region 598247			924 bp distal
Rr598248	regulatory region 598248			1269 bp distal
Rr598249	regulatory region 598249			275 bp distal
Tssr38640	transcription start site region 38640			929 bp downstream
Tssr38641	transcription start site region 38641			898 bp downstream
Tssr43002	transcription start site region 43002			1001 bp upstream
Tssr43003	transcription start site region 43003			within coordinates