rs48920249 SNP Detail

Summary

• ID
  rs48920249
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:127699925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGTGAAGC TTCAATGCTC
  AGTGGATAAA AGTGACTGCC ACCAAGACTG ATGATCTTAG TTCAATCCCC ATGGTCCACG
  TGGTAGGTGA GAAGAGTCCT CAAGTCAACT TCCAACCTGT ACATATGTGC TTTGGCATGC
  CCGCAGCAAC ATGTGCCCTG CCGCAACATG CACAACTGAA GAAAACAGAA AGGACAGATC
  Y
  GCTTACTGTG TGTTTCTTTT GTATTGTATT ATATAAGACA CTTCGTACAA TATTGAAAGG
  AGTCAACAGA GAGGGCACAG ACTTGCCTTG TCCTTAATCT TATATGGAAG CCACCTTAAC
  ATCAAGTGCC ATGCTGGCTG TTGTCTTCTG TAGATGTTAT AAAGTTGAAA AGCTCTCCTC
  CATTTCTACT TTTCTCTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60798960	NES16471985	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48920249					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60798960	NES16471985	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:127699925 () rs orientation: forward

Symbol	Name	Function Class
2900009J06Rik	RIKEN cDNA 2900009J06 gene	within coordinates
Ccnt2	cyclin T2	1976 bp upstream
Cpgi690	CpG island 690	1641 bp proximal
Rr396250	regulatory region 396250	1653 bp upstream
Rr417683	regulatory region 417683	897 bp proximal
Rr417684	regulatory region 417684	1667 bp proximal
Tssr8489	transcription start site region 8489	1995 bp upstream