rs48897877 SNP Detail

Summary

• ID
  rs48897877
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:123179611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTGAGCT AGGAGCTGCC
  GCCGTAACTT CTGCCGCTCC CGGATCTCCT GCAGGCGGCT ATCCATGCCC CAGCTTCGGC
  TGCTCACCAC CCCGACAGAC TCCGCGCCCG CCAAAATGCA AATCCACCTG CCAAACCAGG
  AAACACCGGG TCCCGCCCCG CAGAGATTCT GACCCGGAGA CTTTCACGTC CCTCAGGAGG
  R
  AGTTTCCGGC GCGCCTGAAA CAGGCTATGC CTGAACAGGA AGTCCCGCCT CCAGGACGCC
  GAAGATATGA TGTCACACGA CGAGACCCAA TGGGGATGTA GTGGTGGTTG AGGGCGAGGA
  GCCGCTTTTG GCTATCTTCT TAGTGCTTAA AGTCTTTCCT GAAGGGTTAG GCTCGGTTTT
  TTTGTTTTTT GTTTTTCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135764350	ENSMUSSNP6361815	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss320919486	CHEV_3_123088880	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48897877					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123179611 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13777	CpG island 13777	within coordinates
Mettl14	methyltransferase 14, N6-adenosine-methyltransferase subunit	mRNA-UTR
Rr397990	regulatory region 397990	within coordinates
Rr584510	regulatory region 584510	42 bp distal
Rr584511	regulatory region 584511	within coordinates
Tssr35499	transcription start site region 35499	290 bp upstream
Tssr35500	transcription start site region 35500	within coordinates
Tssr35501	transcription start site region 35501	32 bp downstream