rs48895863 SNP Detail

Summary

• ID
  rs48895863
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:31053976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAG ATGCACTGTT TATTTGCTTA
  G
  GAAAGGCATG CAGTGAGTAA GTGCC                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146399986	ENSMUSSNP1302743	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320221343	CHEV_2_31019484	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48895863					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31053976 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gpr107	G protein-coupled receptor 107			Intron
				Noncoding-Transcript-Variant
Rr372995	regulatory region 372995			within coordinates
Rr396880	regulatory region 396880			859 bp upstream
Rr554555	regulatory region 554555			within coordinates
Rr554556	regulatory region 554556			872 bp proximal
Tssr23435	transcription start site region 23435			422 bp upstream
Tssr23436	transcription start site region 23436			393 bp upstream