rs48885179 SNP Detail

Summary

• ID
  rs48885179
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79054477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGATCTG CCCTGTCAAC
  TTTTAAACGT CCGTGCCTCT CCTACCTCAA AGGCAAAATT AAACTAGATT CCTCCTTAGA
  CACAATTTCC TATGTCTACA GACATTCTCT TCCCACACTT CACAACCAAA TCTTGCAAGA
  ATTCCTCATT TTCGACTTTC CCTGTTTTTC CATCCTGTAT GTTATGCAGA TAAAAAGCCG
  M
  TTGGATCTGG TACAGGGTTA TACATGTTTG AAGCATGTTC AACACCCGTT CCTCCTGATA
  TCCATTACAC TGTTTCTAGT TTTCCTTCAT CTAAGTTTCT CTTCATCTCT GCTGCTATCA
  TCCCCTTCCA GGAATTATTA TTTGGCCTTT AACCCTGCCC CCCAAAAAAG CCAACAGTCT
  GGATTCATTG TGTACACTAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60421099	NES15922932	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48885179					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60421099	NES15922932	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79054477 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rapgef2	Rap guanine nucleotide exchange factor (GEF) 2			Intron
				Noncoding-Transcript-Variant
Rr578467	regulatory region 578467			1703 bp distal
Rr578468	regulatory region 578468			805 bp distal
Tssr33632	transcription start site region 33632			1240 bp upstream
Tssr33633	transcription start site region 33633			331 bp downstream