rs48870048 SNP Detail

Summary

• ID
  rs48870048
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:81962703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTA GTTAGAGGGT TCTATGGCTA
  Y
  GAACAGATAC CATGACCAAG GCAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss133338766	ENSMUSSNP206562	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321840792	CHEV_6_81935716	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48870048					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:81962703 () rs orientation: forward

Symbol	Name	Function Class
Gm20383	predicted gene, 20383	within coordinates
Gm44202	predicted gene, 44202	19 bp downstream
Rr632571	regulatory region 632571	1036 bp proximal
Rr632572	regulatory region 632572	1435 bp proximal
Rr632573	regulatory region 632573	1854 bp proximal