rs48860282 SNP Detail

Summary

• ID
  rs48860282
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:78797014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAT ATTGTGACAG TACAGATCCC
  C
  GTTCATCCCT GGTCCCCATA CTTTG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148190156	ENSMUSSNP4182825	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss325025961	CHEV_15_78743244	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48860282					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78797014 () rs orientation: forward

Symbol	Name	Function Class
1700027A07Rik	RIKEN cDNA 1700027A07 gene	within coordinates
Cpgi7305	CpG island 7305	498 bp proximal
Gm49510	predicted gene, 49510	Intron
Pdxp	pyridoxal (pyridoxine, vitamin B6) phosphatase	Noncoding-Transcript-Variant
Rr404490	regulatory region 404490	827 bp upstream
Rr505452	regulatory region 505452	315 bp distal
Rr505453	regulatory region 505453	562 bp distal
Rr505454	regulatory region 505454	615 bp proximal
Rr505455	regulatory region 505455	948 bp proximal
Sh3bp1	SH3-domain binding protein 1	767 bp downstream
Tssr132010	transcription start site region 132010	1298 bp downstream
Tssr132011	transcription start site region 132011	1093 bp upstream
Tssr132012	transcription start site region 132012	1102 bp upstream
Tssr132013	transcription start site region 132013	1117 bp upstream
Tssr132014	transcription start site region 132014	1556 bp upstream
Tssr132015	transcription start site region 132015	1594 bp upstream