rs48850614 SNP Detail

Summary

• ID
  rs48850614
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:106593452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GTAAAGATGA CCTTAAACTG TTGATCCTCC TTCTCCATGT
  CCCTGTGCTG TGATTTCAAG CATATACCAC CATGTCTGGC AGCTTCCCAA ACAAAACTTT
  C
  TATTAGTATG TTCATAGTAG CTGCGTTTCC AGTGGCCAAA AGTGAAACAG TCCAAATGTC
  CACCAACAGG TGAAATGCAT TAAGATACCA TAACATACAT G                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135580121	ENSMUSSNP2471891	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48850614					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106593452 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13667	CpG island 13667			886 bp distal
Gm56790	predicted gene, 56790			1042 bp upstream
Lrif1	ligand dependent nuclear receptor interacting factor 1			Intron
				Noncoding-Transcript-Variant
Rr582860	regulatory region 582860			1249 bp distal
Rr582861	regulatory region 582861			1139 bp distal
Rr582862	regulatory region 582862			552 bp distal
Tssr31131	transcription start site region 31131			1115 bp downstream
Tssr34985	transcription start site region 34985			1234 bp upstream