rs48824619 SNP Detail

Summary

• ID
  rs48824619
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:47055782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCAATATA TTCAATATTA
  ATTTTAAAGA TCCAACTATA ACTATATAAA CAATTCTAAC ATTGTTGTAT CACTGATGTC
  TACATTTTTA AAAACACACC CTTGTACAGT AGCATATACC TGCAATCCCA GAATGTGGCT
  CTCAGGAACT GCAGGTCACC CTCAGCTAAC CGGCAAGCTG AAAGCCAGCT TAGCCTTCAT
  Y
  ATACCCTGTT TTTAAAAAAT ATAAAAAAAT AGCCGGGTGA AGGTGGTGCA CCACTTTGAT
  GCCAGCATTC AGAAGGCAGA AGGAGGTGGA TCTCTCTAAG TTTGAGGGAA GCCTGGTCTA
  TAGAGCGAGT TTTAGAAAGG CCAGGCCTAC AAGGAGAAAC CCTGACTTGA AAAATCTAAA
  TCAATCAATT GATTGATGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148981263	ENSMUSSNP1419676	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48824619					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:47055782 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm22960	predicted gene, 22960			285 bp upstream
Kif13a	kinesin family member 13A			Intron
				Noncoding-Transcript-Variant
Rr478995	regulatory region 478995			1129 bp distal
Rr478996	regulatory region 478996			457 bp proximal
Rr478997	regulatory region 478997			563 bp proximal