rs48794586 SNP Detail

Summary

• ID
  rs48794586
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108803653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATTAACA GTTCACAGGA
  GATTGTCTTG GTCCCACTCA CATAAAAGTC ACTCCTGCCT GGCAGCACAC CAGTTTATTT
  TCTTCTTCAT GTCATTATTA GCAGGGCCTA CTACTACAAG TTTTTGTTTG TTGGGTTTTT
  GTTTTGTTTT TGTAAGTGTA TGAGAGAGTT TGTGGTAAGT ATTGTTCATG TCTTAAAATG
  R
  GGAATATTTT GCAGCAGGGG AAACAGTGCA GGAACTAACT TAACAAGGTT ACAGTTACAA
  GGCAGGATTC TGACTAGATT CTCAGCTGTG TCTTTGGAGC TGCACGGTAA AGCTGTACCT
  AAAACGGAAG TGACTTTTTC ATGCTAGTCC TGAGGTACTC TTGTGAGAAT GTATATGTAT
  TTGGAAAAAC CTATCACAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss133510052	ENSMUSSNP494415	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48794586					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108803653 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17816	CpG island 17816	1540 bp proximal
Edem1	ER degradation enhancer, mannosidase alpha-like 1	Noncoding-Transcript-Variant
Gm35417	predicted gene, 35417	within coordinates
Rr399821	regulatory region 399821	1309 bp downstream
Rr399822	regulatory region 399822	791 bp upstream
Rr399823	regulatory region 399823	1644 bp upstream
Rr636211	regulatory region 636211	1125 bp distal
Rr636212	regulatory region 636212	within coordinates
Rr636213	regulatory region 636213	615 bp proximal
Rr636214	regulatory region 636214	1652 bp proximal
Tssr58099	transcription start site region 58099	1816 bp upstream
Tssr58100	transcription start site region 58100	1834 bp upstream
Tssr58101	transcription start site region 58101	1857 bp upstream
Tssr58102	transcription start site region 58102	1870 bp upstream
Tssr58103	transcription start site region 58103	1903 bp upstream
Tssr58104	transcription start site region 58104	1913 bp upstream
Tssr58105	transcription start site region 58105	1941 bp upstream
Tssr62395	transcription start site region 62395	1689 bp downstream