rs48780144 SNP Detail

Summary

• ID
  rs48780144
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16716770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGCAGGA GGATCAGAAG
  TCCAAAGTTC TGGTTATATA GCAAATTCAA GACCAGCCTA GGAGACGAGA TCTCAGGGGT
  AAAAAGAATG AAAGAAAGAA ACTTGTAGTG ATGCTCAAAT TCTCTGAATT GACTCGTGGT
  ACCCTTCAAG ATGGCTTCTG TGTCCTTAAA GGTTTTTTCT TATTCTTTGA CTGTACCCTA
  R
  CTTTCTGAAC CCAAACGACA TCGCAGGCTT ACTTTGTATC TTCTTTGTCC CCCTGCCTGG
  AAACCTCTCC TTTCTCAAAT GAGAAAGGTA TGAGGCGCTG ACCCTTCACT TCCCAGTGAC
  CCCTCTTTGC CTTAGTTTCT GATTTCAAAG CAGCAGGATC TGCCAATAGA GGAGGTGATG
  CTCTGGCGGT TGCCATGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148401884	ENSMUSSNP5786368	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48780144					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16716770 () rs orientation: forward

Symbol	Name	Function Class
Pnma8c	PNMA family member 8C	238 bp upstream
Rr642835	regulatory region 642835	within coordinates
Tssr64666	transcription start site region 64666	220 bp upstream
Tssr64667	transcription start site region 64667	328 bp upstream