rs48776460 SNP Detail

Summary

• ID
  rs48776460
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:167117927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAAGAAGGG CTGGCCAGAA AAACCAAGGT TGATGTCCTG
  GTTCTGCCTC TAACTTTGAG ACGAGGGTCT CACATACCTT CCTAGGCTGG TCTGATTCAT
  Y
  ACAGAGCCCT GCTCATGTAG TTCTGGGAAT CAAACCGAGG GCGTTGGCCA TGCTGGGCAA
  ACAGCACACC ATCAAATAAG CTATTTCTTT CTACCTTTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss146036308	ENSMUSSNP4809838	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48776460					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:167117927 () rs orientation: forward

Symbol	Name	Function Class
Gm57182	predicted gene, 57182	within coordinates
Mir6347	microRNA 6347	133 bp downstream
Rr422672	regulatory region 422672	within coordinates
Rr422673	regulatory region 422673	1868 bp proximal