rs48755523 SNP Detail

Summary

• ID
  rs48755523
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116721021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTTCTGT TTTGTTCGTC
  ATCTGGTCCT TCGTTTCTTT CCTTTCTTAA TCGGGAAGGT ATGTAGGAAC TTGGAAGGTC
  AGGGATATTA GCATAGATGT CCTCGATTGA CTCTGTAAAG TTGGTGTGAA TTCAAAACAC
  ATGTAAGATA TTTATAATGG TGAAACAAGG CCAGTGATTT TATGAAAATT ACCTCGCTTC
  R
  ACCTGAAACA GGCTGCTTAA AAACATACCT TCTGGGTTTT CTTCCTTTTC CACCTTCACG
  GACTGTAAGA TAAAAGATTT CCAGGGTGAG CTTAGTTTAA GAAAGTCAAA ATACACATCT
  AGAACTACTT CGAAGAATTT TGAAGTGTAG TGTTTGCGGA CTCTTCTGAG GGAATCATAG
  TTTGAAGCTG AGTTACACTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss60435618	NES15934447	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	A	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs48755523					SNP	A	G	G	G	G	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60435618	NES15934447	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116721021 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Palmd	palmdelphin			Intron
				Noncoding-Transcript-Variant
Rr583806	regulatory region 583806			1672 bp proximal
Tssr1028	transcription start site region 1028			97 bp upstream