rs48719504 SNP Detail

Summary

• ID
  rs48719504
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:189495590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGAACAACT TCCCTGATTG CCTTCCACTG GATTTCTGAG
  ACAGGGTCTC TCGTGGGTTC TAGAGCTCAT GGATCCTGCT GCGTCACCGG TGAGCCCCCA
  A
  GATTCTCCTG TCTCTGTTAG GGCTACAGCT CGGGGCTTAA AGGGTGTGCT CTGTATGTAC
  CTGGCTTTTT ATGTGGGTCT TGGGACCCAG ACTCAGTGG                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss146490532	ENSMUSSNP6780170	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs48719504					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189495590 () rs orientation: forward

Symbol	Name	Function Class
Ptpn14	protein tyrosine phosphatase, non-receptor type 14	Intron
Rr372632	regulatory region 372632	1015 bp downstream
Rr425841	regulatory region 425841	1103 bp distal
Rr425842	regulatory region 425842	886 bp proximal