rs48706824 SNP Detail

Summary

• ID
  rs48706824
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:47055878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCTTGTA CAGTAGCATA
  TACCTGCAAT CCCAGAATGT GGCTCTCAGG AACTGCAGGT CACCCTCAGC TAACCGGCAA
  GCTGAAAGCC AGCTTAGCCT TCATCATACC CTGTTTTTAA AAAATATAAA AAAATAGCCG
  GGTGAAGGTG GTGCACCACT TTGATGCCAG CATTCAGAAG GCAGAAGGAG GTGGATCTCT
  M
  TAAGTTTGAG GGAAGCCTGG TCTATAGAGC GAGTTTTAGA AAGGCCAGGC CTACAAGGAG
  AAACCCTGAC TTGAAAAATC TAAATCAATC AATTGATTGA TGGTTAATTA ATTTACTGTC
  TGTGGTCAGG GTTTACCAGC GCTTTATACA GGTCACTCAC AATACAAAAG AAATAAATGA
  GCTAGAACGC TCTCTTTGGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148981268	ENSMUSSNP737756	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48706824					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:47055878 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm22960	predicted gene, 22960			189 bp upstream
Kif13a	kinesin family member 13A			Intron
				Noncoding-Transcript-Variant
Rr478995	regulatory region 478995			1225 bp distal
Rr478996	regulatory region 478996			361 bp proximal
Rr478997	regulatory region 478997			467 bp proximal