rs48687454 SNP Detail

Summary

• ID
  rs48687454
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:142326522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAAAATCTG GAACTTCCCG GGTTACTACA GGGTCTATGT
  CACAGTGCCT GTGAGAGAGG ACAGAGCACT CTGCAGCCAG CCTCAGAGGC AAAGCTGACC
  R
  GCATTGAAAA GCTGCTTCTT CTTCTTCTCT AAAGGATTTC TCTTCAGGTA AGACAGAGGC
  AGGGGTGGAA AACTGTTTAG CAGACTGCTG GTTTACCCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136016128	ENSMUSSNP2735683	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48687454					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142326522 () rs orientation: forward

Symbol	Name	Function Class
Gbp2	guanylate binding protein 2	mRNA-UTR
Gbp2b	guanylate binding protein 2b	1582 bp downstream
Gm54185	predicted gene, 54185	1479 bp upstream
Rr398088	regulatory region 398088	578 bp downstream
Rr586457	regulatory region 586457	1785 bp distal
Rr586458	regulatory region 586458	149 bp distal
Rr586459	regulatory region 586459	within coordinates
Tssr32225	transcription start site region 32225	1910 bp downstream
Tssr32226	transcription start site region 32226	1870 bp downstream
Tssr32227	transcription start site region 32227	134 bp downstream
Tssr32228	transcription start site region 32228	96 bp downstream
Tssr32229	transcription start site region 32229	57 bp downstream
Tssr32230	transcription start site region 32230	28 bp downstream
Tssr32231	transcription start site region 32231	11 bp downstream
Tssr32232	transcription start site region 32232	512 bp upstream
Tssr35947	transcription start site region 35947	1580 bp upstream