rs48629431 SNP Detail

Summary

• ID
  rs48629431
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16716349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTCAGTTG GAAGGTTTCA
  TGAGGGTCGA CTCATAACTG TAATTTCAGT TCCAGAGGAT CCAATGTCCT CATCTGACCT
  GCATGGCATC AGGCATGCAT GTGCTACACA GACATACAAG CAGACAAAAC ACTCAGACAT
  AATATATAAA AAGCATTTAA AAAGGAACGA TTTTTAAAAA TAACTTTCCA CCTGTGTATG
  Y
  ATTTACATGG CTCCACCTGT TCTTAGTTTA TTCAGGAAGT ATTAATGTTT GTTACTGTCT
  GTTACAATCT GTTGATTTGA ACATCAATGC TCAGGCAGGA GTGTTTCCCA GCTGGTAGAT
  GCTTTCCTGC CATGCTAGGA GCCTGGTTTC CATCCTCAGA GCTACAATAG ACCAGGCACT
  GCTCGCTGTA GGCATGTAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148401848	ENSMUSSNP481018	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48629431					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16716349 () rs orientation: forward

Symbol	Name	Function Class
Pnma8c	PNMA family member 8C	659 bp upstream
Rr642834	regulatory region 642834	1618 bp distal
Rr642835	regulatory region 642835	172 bp proximal
Tssr64666	transcription start site region 64666	641 bp upstream
Tssr64667	transcription start site region 64667	749 bp upstream