rs48603067 SNP Detail

Summary

• ID
  rs48603067
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:78796519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGA GATGAAGTGT TTGAGATTAG
  T
  GTTCGCCTAG GTCTTCCTCC CACCC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148190151	ENSMUSSNP3012484	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss325025960	CHEV_15_78742749	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48603067					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78796519 () rs orientation: forward

Symbol	Name	Function Class
1700027A07Rik	RIKEN cDNA 1700027A07 gene	within coordinates
Cpgi7305	CpG island 7305	993 bp proximal
Gm49510	predicted gene, 49510	Intron
Pdxp	pyridoxal (pyridoxine, vitamin B6) phosphatase	Noncoding-Transcript-Variant
Rr404490	regulatory region 404490	1322 bp upstream
Rr505452	regulatory region 505452	within coordinates
Rr505453	regulatory region 505453	67 bp distal
Rr505454	regulatory region 505454	1110 bp proximal
Rr505455	regulatory region 505455	1443 bp proximal
Sh3bp1	SH3-domain binding protein 1	272 bp downstream
Tssr132010	transcription start site region 132010	803 bp downstream
Tssr132011	transcription start site region 132011	1588 bp upstream
Tssr132012	transcription start site region 132012	1597 bp upstream
Tssr132013	transcription start site region 132013	1612 bp upstream