rs48597399 SNP Detail

Summary

• ID
  rs48597399
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52664212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGAGCTGT GGTAAGGAGG
  GTGTGGTAGA ATAAACTATT TACCCCATGG CTGGACTGAA AAAGCACAAG AAGGGCAATC
  GCGAGTGGTC AGAAGTGGTT CCCACCTTTT AAAGATTCCA CTACCTCCCA AGAGCACCAT
  GGGTCACTTT GCTAAGCCGT AGACATCCTC CGTGCCCAGG TCTGCACCTC TATAGGAAGA
  R
  GCGGAAATGT ACCCTGCACG TGGTTCCCAC CTCTTCCCTC CTCTTCAGAC CACACCTTCT
  TCCCTGCTGG GAAGCTTCTG ATGATGCCCT TTTACAGTTT GGTCAGAGCC AGTTATGATG
  GGCACTCAGT CCCAGCACTC AGGAGACAGG GGCAAGCCGA GGGTCTCTGA CTCTGAGGCC
  AGCCAACCTG GTTTAAGTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135178209	ENSMUSSNP5458272	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48597399					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52664212 () rs orientation: forward

Symbol	Name	Function Class
Gm2447	predicted gene 2447	within coordinates
Rr576580	regulatory region 576580	1389 bp distal
Rr576581	regulatory region 576581	1827 bp proximal
Rr576582	regulatory region 576582	1958 bp proximal
Tssr33262	transcription start site region 33262	1735 bp upstream