rs48589429 SNP Detail

Summary

• ID
  rs48589429
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:76753135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTT GACAGCGGCA AGTCTGGGTG
  W
  ACATGCAGAG AGCTCCCTCT CCCAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss139757458	ENSMUSSNP5701297	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48589429					SNP	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:76753135 () rs orientation: forward

Symbol	Name	Function Class
4930444M15Rik	RIKEN cDNA 4930444M15 gene	within coordinates
E130202H07Rik	RIKEN cDNA E130202H07 gene	63 bp upstream
Gm63554	predicted gene, 63554	538 bp downstream
Rr389872	regulatory region 389872	within coordinates
Rr495677	regulatory region 495677	1427 bp distal
Tssr126731	transcription start site region 126731	247 bp upstream
Tssr126732	transcription start site region 126732	281 bp upstream
Tssr129811	transcription start site region 129811	189 bp upstream
Tssr129812	transcription start site region 129812	160 bp upstream