rs48586825 SNP Detail

Summary

• ID
  rs48586825
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116458081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G AGTGGGAGAA ACTTCATAAC TAAATCCCGA GATCATATTT
  TGCATGGGTG TAGAGGATTA AGAAGGTTGT TCTAAGGTAG GCGTGGTGGT GCATATCTTC
  R
  GTCCTGGCAT TTGTGTTGTA GAGACAGTGT GACCAGGAGT TCAAGGCCAG CCTCTACAGC
  AAATTCAAGG TTAGCCCCAG GCTACATGAA AACCAGACTG A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss135670773	ENSMUSSNP1252119	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs48586825					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116458081 () rs orientation: forward

Symbol	Name	Function Class
4930512P04Rik	RIKEN cDNA 4930512P04 gene	277 bp downstream
Cpgi13738	CpG island 13738	1404 bp distal
Gm43191	predicted gene 43191	Intron
Mfsd14a	major facilitator superfamily domain containing 14A	1817 bp upstream
Rr375625	regulatory region 375625	within coordinates
Rr397966	regulatory region 397966	1631 bp downstream
Rr583758	regulatory region 583758	1766 bp distal
Rr583759	regulatory region 583759	1265 bp distal
Tssr35326	transcription start site region 35326	1884 bp upstream
Tssr35327	transcription start site region 35327	1862 bp upstream
Tssr35328	transcription start site region 35328	1848 bp upstream
Tssr35329	transcription start site region 35329	1791 bp upstream
Tssr35330	transcription start site region 35330	1778 bp upstream