rs48580829 SNP Detail

Summary

• ID
  rs48580829
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:64656465 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATGG CTCTTGATGG AAAGGCCAAG
  R
  ATCTGGTATT TGTTTGGTTC ATGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148571209	ENSMUSSNP4088142	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss321560888	CHEV_5_64890361	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48580829					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:64656465 () rs orientation: forward

Symbol	Name	Function Class
Gm43838	predicted gene 43838	within coordinates
Gm52815	predicted gene, 52815	within coordinates
Rr367845	regulatory region 367845	1968 bp downstream
Rr378042	regulatory region 378042	662 bp upstream
Rr612035	regulatory region 612035	1682 bp distal
Rr612036	regulatory region 612036	179 bp distal
Rr612037	regulatory region 612037	61 bp proximal
Rr612038	regulatory region 612038	1395 bp proximal