rs48543924 SNP Detail

Summary

• ID
  rs48543924
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41113724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTTGGGAG GCATGGCCTG
  AGACTTTCAT CAGATGGCAC CACAGAGGTT TCAATCAGCT CTTGCAACAT CCTGTAAAGT
  TGATAAACAC AGCATCTTCA CCTTTCTGCT GTGATGTGAG ATCCAACAGA CAGAGCCACT
  GATGCTTATA GTTGAGTATA TCAGAAAAGT GACTTTGGAA TCCATTTCTT CTCTATGTAA
  M
  TTGAGACATC TGTCTCCAGG CAAGAGAGTA TTTTAGGAAC CTGGTGACCT GCTGAAAAGA
  CTTGACGATC TCTGTCTGTC TGTCCGTTGG TTACCTAGCA AACACAGAAG TGGATGCTCA
  CAGTCAGCTA ATGGATGGAT CACAGGGCTC CCAATGGAGG AGCTAGAGAA AGTACCCAAG
  GAGCTAAAGG GATCTGCAAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	KK/HlJ	NZW/LacJ	WSB/EiJ
ss60399318	NES15900139	PERLEGEN	MM_PANEL2	f	SNP	C	A	C
SNP Consensus Information
SNP					Consensus Type	KK/HlJ	NZW/LacJ	WSB/EiJ
rs48543924					SNP	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60399318	NES15900139	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41113724 () rs orientation: forward

Symbol	Name	Function Class
Gm40038	predicted gene, 40038	within coordinates
Gm64942	predicted gene, 64942	within coordinates
Rr575902	regulatory region 575902	163 bp distal
Rr575903	regulatory region 575903	1545 bp proximal