rs48541874 SNP Detail

Summary

• ID
  rs48541874
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79127751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTA GAACTCATTC TGTAGACCAG
  R
  CTGGCCTTGA AGTCGTAGGG ATCCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135368979	ENSMUSSNP4017532	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss320810471	CHEV_3_79024366	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48541874					SNP	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79127751 () rs orientation: forward

Symbol	Name	Function Class
4921511C10Rik	RIKEN cDNA 4921511C10 gene	within coordinates
Rapgef2	Rap guanine nucleotide exchange factor (GEF) 2	Intron
Rr375215	regulatory region 375215	885 bp downstream
Rr578485	regulatory region 578485	985 bp distal
Rr578486	regulatory region 578486	947 bp proximal
Rr578487	regulatory region 578487	1384 bp proximal