rs48500128 SNP Detail

Summary

• ID
  rs48500128
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:142326604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TCAGAGGCAA AGCTGACCAG CATTGAAAAG CTGCTTCTTC
  TTCTTCTCTA AAGGATTTCT CTTCAGGTAA GACAGAGGCA GGGGTGGAAA ACTGTTTAGC
  W
  GACTGCTGGT TTACCCTAAC CAGAGGAGGC TGAAACCAGC ACAGATGTGT GTGGCCCAGG
  GCTAGGTGAC AGAGGCAGAC TTTACCCTAG ATGTCCCTGT C                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss136016140	ENSMUSSNP4563226	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48500128					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142326604 () rs orientation: forward

Symbol	Name	Function Class
Gbp2	guanylate binding protein 2	Intron
Gbp2b	guanylate binding protein 2b	1664 bp downstream
Gm54185	predicted gene, 54185	1561 bp upstream
Rr398088	regulatory region 398088	660 bp downstream
Rr586457	regulatory region 586457	1867 bp distal
Rr586458	regulatory region 586458	231 bp distal
Rr586459	regulatory region 586459	within coordinates
Tssr32225	transcription start site region 32225	1992 bp downstream
Tssr32226	transcription start site region 32226	1952 bp downstream
Tssr32227	transcription start site region 32227	216 bp downstream
Tssr32228	transcription start site region 32228	178 bp downstream
Tssr32229	transcription start site region 32229	139 bp downstream
Tssr32230	transcription start site region 32230	110 bp downstream
Tssr32231	transcription start site region 32231	93 bp downstream
Tssr32232	transcription start site region 32232	430 bp upstream
Tssr35947	transcription start site region 35947	1662 bp upstream