rs48497789 SNP Detail

Summary

• ID
  rs48497789
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41118777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAATTCA CCAGAGTCTT
  CAGAGAGATA GACTTGCCAT AGTCCATGGA GCACAGTGTC TGAGTTCTGG CTTCCTTAAC
  TGTCAAATAA CAGATATTTT GTGGATTTCA GGCATGGAAT ACATTTTTAT TTGTTATAGC
  TGATATAGTA AACAATTCAC ACAGCCTTAT TTATATTCCT ATATGACCCT GTGGTTGGAG
  Y
  GCATCTGAAA TACCTGTCTG TATACACCCC TTGCTCTTCT GTCTCATTAC ATCAGTTTTC
  TCCCTGTGTC CAAGTGTTCA TACATTCTAC ACTCCACCCC CCCCCACGCA CACCCACCCA
  CTAGTTATCA TCCCATCCAT GGGATTCTCC AATTGGGAAA GAATATGTCC CTCTTGGTAT
  AATGAATATG GGTGGACAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	WSB/EiJ
ss60399298	NES15900065	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	WSB/EiJ
rs48497789					SNP	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60399298	NES15900065	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41118777 () rs orientation: forward

Symbol	Name	Function Class
Gm40038	predicted gene, 40038	within coordinates
Gm64942	predicted gene, 64942	within coordinates
Rr575904	regulatory region 575904	100 bp distal