rs48490233 SNP Detail

Summary

• ID
  rs48490233
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121084433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCAGGAAAT CTCCCAAGCA GTTTGCTGAC TCGGGAACCA
  ACACACCTAG CTTTATAAGG AGATCTCAGG GCGCCTTCCT GGAACTTCTG ACTCAGTATC
  R
  CTCCCAAAAG CATTCTAGGC TCCAGGTAAA TGTGATCGTC AATCCAAACT GAATTTAACA
  ACGGACCATA TGGTGTAGCA TTCTTAGGCA GCAGGAGTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss60440895	NES15940978	PERLEGEN	MM_PANEL2	f	SNP		A		G	A	A
ss135717648	ENSMUSSNP4999658	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs48490233					SNP	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60440895	NES15940978	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121084433 () rs orientation: forward

Symbol	Name	Function Class
Alg14	asparagine-linked glycosylation 14	989 bp upstream
Cpgi13756	CpG island 13756	698 bp proximal
Gm56787	predicted gene, 56787	69 bp downstream
Rr367543	regulatory region 367543	754 bp upstream
Rr375663	regulatory region 375663	507 bp downstream
Rr584038	regulatory region 584038	within coordinates
Rr584039	regulatory region 584039	839 bp proximal
Rr584040	regulatory region 584040	1047 bp proximal
Tssr31434	transcription start site region 31434	941 bp upstream
Tssr31435	transcription start site region 31435	1037 bp upstream
Tssr31436	transcription start site region 31436	1067 bp upstream
Tssr35412	transcription start site region 35412	814 bp downstream