rs48480213 SNP Detail

Summary

• ID
  rs48480213
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:3768498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGGATGAA GGTCGGGGAC
  CAGGGGGTTG TGTTCAGCTC TCACCACGCT CTTGCAGTTC TTTCAGGATG CTCTCCTGCT
  CCATCAACTT TGCTTGTATG TCCTTAAACT CCGCCAGTGT GGTTTGCAAC TGCGCTTTTG
  TCACGGAGCC TATATGGGGA TGGGGCAAAA ACCAGTCTTG CCCCCACTTG CCTCTCCCAA
  M
  CCACCTGCCC CATTTCCCAG CCCCTCAACT TTCAAGTTTT CACCAAACCC CTCTTTCTTA
  CAGCAATTCC TGCAGGCTCC GATATCATCC TTCAGGGAAC TCAACGTCAT CTTCTGCTCT
  GAGGCTGGAA AGACCCCACC CACCACACAC AAACCAGTCA ACCCGATTGC AGCGGCCTCA
  GCTATTCACT ACCCAGGTCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148548820	ENSMUSSNP1642729	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48480213					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3768498 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Clec4g	C-type lectin domain family 4, member g			Intron
				Noncoding-Transcript-Variant
Gm16553	predicted gene 16553			within coordinates
Rr400747	regulatory region 400747			71 bp upstream
Rr658970	regulatory region 658970			101 bp proximal
Rr658971	regulatory region 658971			222 bp proximal
Tssr80223	transcription start site region 80223			940 bp upstream
Tssr80224	transcription start site region 80224			916 bp upstream