rs48479233 SNP Detail

Summary

• ID
  rs48479233
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:142324541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TGGAACACAG CTCCTAGGGC CTCATGCTAT CTGCAGACAT
  TGGTTCCCAG GGTAGACAAT GGGCAGTGCC CAATGTGGGA AGGCTCTGTG GTTGCTGGAT
  G
  AGCAGAGTAT TTCATTGGAG AGGAGAAGAA AATTCCCCTC CAGGCAGAAT GCATAGGCGA
  GTGGGCGTTG CACCTCCCCC ATTGAGAGAA CTTCTTGTTT T                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss136016050	ENSMUSSNP4000663	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs48479233					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142324541 () rs orientation: forward

Symbol	Name	Function Class
Gbp2	guanylate binding protein 2	1883 bp upstream
Gbp2b	guanylate binding protein 2b	mRNA-UTR
Gm54185	predicted gene, 54185	within coordinates
Rr398088	regulatory region 398088	1102 bp upstream
Rr586457	regulatory region 586457	within coordinates
Rr586458	regulatory region 586458	1332 bp proximal
Rr586459	regulatory region 586459	1833 bp proximal
Tssr32216	transcription start site region 32216	595 bp downstream
Tssr32217	transcription start site region 32217	557 bp downstream
Tssr32218	transcription start site region 32218	503 bp downstream
Tssr32219	transcription start site region 32219	466 bp downstream
Tssr32220	transcription start site region 32220	452 bp downstream
Tssr32221	transcription start site region 32221	434 bp downstream
Tssr32222	transcription start site region 32222	378 bp downstream
Tssr32223	transcription start site region 32223	321 bp downstream
Tssr32224	transcription start site region 32224	267 bp downstream
Tssr32225	transcription start site region 32225	54 bp upstream
Tssr32226	transcription start site region 32226	102 bp upstream
Tssr32227	transcription start site region 32227	1816 bp upstream
Tssr32228	transcription start site region 32228	1867 bp upstream
Tssr32229	transcription start site region 32229	1906 bp upstream
Tssr32230	transcription start site region 32230	1942 bp upstream
Tssr32231	transcription start site region 32231	1959 bp upstream
Tssr35947	transcription start site region 35947	395 bp downstream